PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01083g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8306.63 Da    PI: 10.1823
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01083g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.51.4e-071637223
                              ---SHHHHHHHHHHHHHHHHHH CS
                    SRF-TF  2 rienksnrqvtfskRrngilKK 23
                              +i+n+  r++t+skRr g+ KK
  Peinf101Scf01083g00010.1 16 KIDNEDDRYTTLSKRRSGLYKK 37
                              599******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.082737IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-9755IPR002100Transcription factor, MADS-box
PfamPF003193.5E-61637IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MEGKMTKGRQ KIPMVKIDNE DDRYTTLSKR RSGLYKKPFS FFHPTPEAII DRFLYPNMQL  60
SESTHLIATL S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.12e-31PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DM887e-20M1DM88_SOLTU; Uncharacterized protein
TrEMBLM1DV355e-20M1DV35_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000912772e-19(Solanum tuberosum)
STRINGPGSC0003DMT4000948861e-19(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-15AGAMOUS-like 61